研究生: |
蕭名智 Ming-Chih Hsiao |
---|---|
論文名稱: |
DNA於AFM影像以形狀數編碼之長度估測器 DNA Contour Length Estimator utilizing Shape Number from AFM Imaging |
指導教授: |
張以全
I-Tsyuen Chang |
口試委員: |
黃緒哲
Shiuh-Jer Huang 徐繼聖 Gee-Sern Hsu |
學位類別: |
碩士 Master |
系所名稱: |
工程學院 - 機械工程系 Department of Mechanical Engineering |
論文出版年: | 2016 |
畢業學年度: | 104 |
語文別: | 中文 |
論文頁數: | 75 |
中文關鍵詞: | 原子力顯微鏡 、去氧核醣核酸 、輪廓長度 、長度估測器 、影像處理 、細線化 |
外文關鍵詞: | AFM, DNA, contour length, length estimator, image processing, thinning |
相關次數: | 點閱:486 下載:3 |
分享至: |
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本論文研究AFM模擬及實驗所取得的DNA影像,以細線化後的DNA影像為基礎,提出一種利用鏈碼和形狀數編碼,用來計算DNA輪廓長度的方法。DNA長度的計算誤差大部分來自在不同解析度下不同曲率線段,在影像數位化過程中所造成的,因此本論文討論一種可以同時在不同的圖像解析度下,計算出同樣DNA輪廓長度的參數定義方法。於研究中吾人使用DNA於二維平面的蠕蟲鏈模型產生大量不同解析度的AFM模擬影像,根據解析度的不同對設計出的長度估測器進行係數的計算,最後開發出精確、快速且能應用於任何AFM影像解析度的DNA長度估測器。此方法可以應用推廣至不同的長條形生物樣本,以及不限於AFM影像。
This thesis simulates on DNA images acquired from AFM experiments, and proposes a method estimating DNA contour length based on digitized DNA images encoded by chain code and shape number after its image thinning operation. The error in calculating DNA length comes mostly from digitization of line segments with different curvature under various resolution. As a result, this thesis discusses the calculation of DNA contour length with a focus on different pixel resolution images. We apply a two-dimensional worm-like chain model of DNA to produce a large number of simulated AFM images with different resolutions, and according to different resolutions we calculate the coefficients of our designed length estimator. Finally, we developed a length estimator which is precise, rapid, and applicable to any resolution of AFM image using different coefficients.
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