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研究生: Evelyne Calista
Evelyne Calista
論文名稱: AI Models for Precision Medicine in Thyroid Cancer Diagnosis using Tissue Microarrays
AI Models for Precision Medicine in Thyroid Cancer Diagnosis using Tissue Microarrays
指導教授: 王靖維
Ching-Wei Wang
口試委員: 王靖維
Ching-Wei Wang
陳燕麟
Yen-Lin Chen
朱旆億
Pei-Yi Chu
鄭智嘉
Chih-Chia Cheng
學位類別: 碩士
Master
系所名稱: 應用科技學院 - 醫學工程研究所
Graduate Institute of Biomedical Engineering
論文出版年: 2018
畢業學年度: 106
語文別: 英文
論文頁數: 71
中文關鍵詞: Thyroid cancerTissue microarrayMachine learningQuantification
外文關鍵詞: Thyroid cancer, Tissue microarray, Machine learning, Quantification
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  • The aim of precision medicine is to harness new knowledge and technology to
    optimize the timing and targeting of interventions for maximal therapeutic benefit.
    This study explores the possibility of building AI models without precise pixel-level
    annotation in prediction of the tumor size, extrathyroidal extension, Lymph node
    metastasis, cancer stage and BRAF mutation in thyroid cancer diagnosis, providing
    the patients’ background information, histopathological and immunohistochemical
    tissue images.
    A novel framework for objective evaluation of automatic patient diagnosis algorithms has been established under the auspices of the IEEE International Symposium on Biomedical Imaging 2017 - A Grand Challenge for Tissue Microarray
    Analysis in Thyroid Cancer Diagnosis. Here, we present the datasets, methods and
    results of the challenge and lay down the principles for future uses of this benchmark.
    The main contributions of the study include the creation of the data repository of
    tissue microarrays, the creation of the clinical diagnosis classification data repository
    of thyroid cancer, and the definition of objective quantitative evaluation for comparison and ranking of the algorithms. With this benchmark, three automatic methods
    for predictions of the five clinical outcomes have been compared, and detailed quantitative evaluation results are presented in this paper. Based on the quantitative
    evaluation results, we believe automatic patient diagnosis is still a challenging and
    unsolved problem.


    The aim of precision medicine is to harness new knowledge and technology to
    optimize the timing and targeting of interventions for maximal therapeutic benefit.
    This study explores the possibility of building AI models without precise pixel-level
    annotation in prediction of the tumor size, extrathyroidal extension, Lymph node
    metastasis, cancer stage and BRAF mutation in thyroid cancer diagnosis, providing
    the patients’ background information, histopathological and immunohistochemical
    tissue images.
    A novel framework for objective evaluation of automatic patient diagnosis algorithms has been established under the auspices of the IEEE International Symposium on Biomedical Imaging 2017 - A Grand Challenge for Tissue Microarray
    Analysis in Thyroid Cancer Diagnosis. Here, we present the datasets, methods and
    results of the challenge and lay down the principles for future uses of this benchmark.
    The main contributions of the study include the creation of the data repository of
    tissue microarrays, the creation of the clinical diagnosis classification data repository
    of thyroid cancer, and the definition of objective quantitative evaluation for comparison and ranking of the algorithms. With this benchmark, three automatic methods
    for predictions of the five clinical outcomes have been compared, and detailed quantitative evaluation results are presented in this paper. Based on the quantitative
    evaluation results, we believe automatic patient diagnosis is still a challenging and
    unsolved problem.

    Abstract Publication Acknowledgement Table of Content List of Tables List of Figure 1 Introduction 1.1 Motivation 1.2 Aim and Objectives 1.3 Contributions 1.4 Thesis Organization 2 Related Work 2.1 Zhou and Zhu (TMA-D2LM): Tissue Microarray Analysis via A Deep Dictionary Learning Method 2.1.1 TMA-D2LM : Method 2.1.2 TMA-D2LM : Result 2.2 Suzuki et al: Hybrid Prediction Model for Thyroid Cancer Diagnosis 2.2.1 Suzuki et al : Method 2.2.2 Suzuki et al : Result 3 Method 3.1 Stain Separation (Color Deconvolution) 3.2 Segmentation of Tissue Interest 3.3 Quantification 3.4 Core-based Machine Learning Model 3.5 Core to Patient Based Prediction 4 Results 4.1 Data Materials and Evaluation Approaches 4.1.1 Data Materials 4.1.2 Data Distribution 4.1.3 Evaluation Approaches 4.2 Computational Time 4.2.1 Our Computational Time 4.2.2 TMA-D2LM : Computational Time 4.2.3 Suzuki et al : Computational Time 4.3 Result Analysis 5 Conclusion Reference

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